Fig. 4

Over-represented GO terms in selected clusters and expression profiles of the clusters. A Dotplot of selected over-represented GO terms in clusters related to CAZymes, mitochondria and ER and secretion. The size of the dot corresponds to gene ratio, i.e., the number of genes belonging to the GO term in question in the cluster compared to all genes belonging to that GO term and the number in parenthesis under each cluster number is the number of identified genes in the cluster. B Gene expression profiles of the selected clusters. Samples 1–12 correspond to wtXYR1 strain and samples 13–24 correspond to mutXYR1 strain. Biological replicates are shown separately, and the dotted lines separate the timepoints from each other. The horizontal black line in the middle is the cluster center and the colored lines represent the expression profiles of individual genes. The color of the line indicates the membership value. The higher the membership value, the better the gene fits in the cluster